D12Rat12 Marker Search Result - Rat Genome Database

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Marker: D12Rat12

Symbol: D12Rat12
Previously known as: R0027-B11; oxsts6070; R027-B11; 
RGD ID: 35923
Expected Size: 152 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01227,911,196 - 27,911,339NCBIRnor6.0
RGSC_v3.41225,802,539 - 25,802,828RGDRGSC3.4
RGSC_v3.41225,802,584 - 25,802,727UniSTSRGSC3.4
RGSC_v3.11225,665,800 - 25,665,943RGD
Celera1226,588,247 - 26,588,390UniSTS
RH 3.4 Map12424.3UniSTS
RH 3.4 Map12424.3RGD
RH 2.0 Map12297.9RGD
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Scl21  
Genes:   Auts2l   Auts2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AGGGCTAGCCTGGAATGAAT
Reverse Primer TGTGTATGGAGACCACTGCC
 
Template 
GCAGGTCGATCTAGAGGATCCCCCCATCCATGCTCAAACAGCAGGTTCAGGGCTAGCCTGGAAT
GAATCTTTGACTCACAAAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTAAGTTCCTACATGGTTACAATACAGAGTACTTAATGTGGTACAAAGAGGCAGTGGTC
TCCATACACAACCACTGGATGAAGATTTTATTGCCATCTCTTTGTAGCACTCCCAGTGTGGCTG
AAACAATAATAATTTGTTTTCTTAACAAAAACAGGAGTCCACTGTGGGGGTACCGAGCTCGAAT
TCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACA
TACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAA

Region

Nucleotide Sequences
GenBank Nucleotide CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100362819 UniSTS
  304419 UniSTS
  544413 UniSTS
UniSTS 120816 UniSTS