D7Rat41 Marker Search Result - Rat Genome Database

Symbol:

D7Rat41

Previously known as:

R0025-D07; oxsts7368; R025-D07;

RGD ID:

35855

Expected Size:

166 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	103,992,567 - 103,992,957	NCBI	Rnor5.0
RGSC_v3.4	7	99,896,264 - 99,896,653	RGD	RGSC3.4
RGSC_v3.1	7	99,930,494 - 99,930,883	RGD
RH 3.4 Map	7	659.7	UniSTS
RH 3.4 Map	7	659.7	RGD
RH 2.0 Map	7	528.3	RGD
FHH x ACI Map	7	44.5199	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub DON/Melb FHH/Eur LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg MNS/Gib NP9 OKA/Wsl OM/Ztm PVG/Pit SD/Rij SHR/OlaHsd WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub SS/Jr COP/OlaHsd NEDH/K BUF/Pit DA/PitN F344/Pit LE/Mol WKY/OlaHsd SR/Jr P5C SHRSP/Riv LN/Mav GH/Omr

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines
6.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TCTGTTTTCCACTCCTAGCATAGA
Reverse Primer	GGACAATCCATACCCTGTCAA

Template	AAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCTATTGTAGATCTATCTCTCGTAATGT GTTCTCTTCTTTTGTGAGTTGTATTATATGGAAGTCTCTGATAATTTTTGTTGATTTTTGTTCA TANTGAGATATAAGGATATAGTTTCATTTGTCTGTATATGGATATCCAATTTTCTCAGCACCAC TTGTTGAATATGCTGTTTTTTGTTGAATGTGTTATTATTTTTGGCTTCATAAGATACATTTACC CTTATTGGACAATCCATACCCTGTCAATAACAGATGTAAATGGTAAANTGAATGATCACTACTT ACTGTTTACCTTTCAAACTTCTCTCTCTGTTACACACACACACACACACACACACACACACACA CTCCTCACATATATTCTTTCTATGCTAGGAGTGGAAAACAGAGGGTACCGCGCTCGAATTCGNA ATCATGGTCATAGCTGTTTCCTGTGTGNAATTGTTATCCGCTCACAATTCCACACAACATNCGA GCCGGAAGCATAAAGTGNNAAGCCTGGGGTGCNANTGAGTGNGCTNANCACATTAATTGCNTGG CCANGNCGCNNCCAGTCGGGAAANTGNGNGNNGCGNATNATGNNCGGCNANG

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences

Additional Information

External Database Links

Database	Acc Id	Source(s)
UniSTS	119042	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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