D4Rat23 Marker Search Result - Rat Genome Database

Advanced Search (OLGA)

Symbol:

D4Rat23

Previously known as:

oxsts7057; R024-D07; R0024-D07;

RGD ID:

35811

Expected Size:

149 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	61,041,057 - 61,041,206 (+)	Marker Load Pipeline
Rnor_5.0	4	58,518,430 - 58,518,579	NCBI	Rnor5.0
Rnor_5.0	4	58,518,376 - 58,518,669	NCBI	Rnor5.0
RGSC_v3.4	4	58,550,170 - 58,550,462	RGD	RGSC3.4
RGSC_v3.4	4	58,550,224 - 58,550,372	UniSTS	RGSC3.4
Celera	4	55,163,661 - 55,163,809	UniSTS
RGSC_v3.1	4	58,826,300 - 58,826,592	RGD
RH 3.4 Map	4	354.6	RGD
RH 3.4 Map	4	354.6	UniSTS
RH 2.0 Map	4	381.6	RGD
SHRSP x BN Map	4	32.83	RGD
Cytogenetic Map	4	q22	UniSTS

Is Marker For:

Strains: ACI/N AVN/Orl BBDR/Rhw BBDP/Rhw BC/CpbU BDIX/Han BDVII/Cub BN-Lx/Cub BN/SsNHsd BP/Cub BUF/Pit COP/OlaHsd DA/PitN FHH/Eur F344/Pit GH/Omr GK/KyoSwe DON/Melb M520/N IS/Kyo WN/N LH/Mav LE/Mol LEW/Pit LOU/CHan LN/Mav MHS/Gib MNR/N MNRA/N MNS/Gib MR/Pit NEDH/K NP9 ODU/N OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SR/Jr SHRSP/Riv SS/Jr WAG/RijKyo WF/Pit WIST/Nhg WKY/OlaHsd WTC/Kyo DA.PVG.1AV1-(D4Rat23-D4Rat108)/Kini DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini
QTLs: Hcar7
Genes: Mkln1

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines
6.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TCAAACTAAGGCGACTGATGTT
Reverse Primer	TGGGGTCTTTAAAAGTATTGTGAA

Template	ATCAGAGGATCCCCACTTGATTCAATATCATATGGAACATTGTGTTTTACTTGCCTTGAACACA ACTCAACTCCCTATTACACCTTAATCTAGTTTAAAGCATATGGGGTCTTTAAAAGTATTGTGAA CAAAAATCAAAATAAAAAAACTATGTGTATGATCTTATATATGTATAAGGGGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTAACCCTAAAGTAAACATCAGT CGCCTTAGTTTGACTTTTTCTCTGAATGACTCTACTTTTTTTTAACTTGACATAAAACTGGCCA GTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCG CTCACAATTCCACACA

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences


GenBank Nucleotide	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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