D9Rat52 Marker Search Result - Rat Genome Database

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Marker: D9Rat52

Symbol: D9Rat52
Previously known as: R0009-C06; oxsts7542; R009-C06; 
RGD ID: 34955
Expected Size: 171 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0987,395,337 - 87,395,775NCBIRnor5.0
RGSC_v3.4981,204,760 - 81,205,197RGDRGSC3.4
RGSC_v3.1981,388,179 - 81,388,616RGD
RH 3.4 Map9716.2UniSTS
RH 3.4 Map9716.2RGD
FHH x ACI Map956.73RGD
FHH x ACI Map956.73UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SS.SHR-(D9Rat7-D9Rat52)/Mco  
QTLs:   Bp393  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAACTATGGCTCGGTGGTTG
Reverse Primer CACATGCACACCGTGAGTG
 
Template
GAGGTCGACTCTAGAGGATCCCCCCCCAGTCCAAGTTTGCAGTAGTTCCCTAGTTAGGGAATAT
TTTTCTGATGACATAGGTGTAGTCTCATCACTGTGTGCTTACTGCCTAGATTAGCACAGAGCAA
AGAATGAATTGGTTTTCCAGGGAAAATTGCTAAATTAGTAAACACGAGAGTAAGGCAGGAAAGA
GCAACAATTTTACTCACAGGTTAATGGTTCACGTTTAGTCAAATTCCAAACTATGGCTCGGTGG
TTGGTATAATTATAAGGACATGTTCTATGATTCCATCTCTTTATTAAATATCTCTAATCNAGGG
ACTGCNAGGAAATGGNGNGNGTGNGTGNGTGNGTNTGTGTGTGTGTGTGTGTGGTGGTGTGCCT
GTGTGGGCACTCACGGTGTGCATGTGGATGTNTGTGTGCATGTGTGTGTGGTGTCTGAAATATN
TCTTGTGTGTGCNAGGNG

Region

Nucleotide Sequences


Additional Information

Database Acc Id Source(s)
UniSTS 119189 UniSTS