PCDHA9_3148 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: PCDHA9_3148

Symbol: PCDHA9_3148
Previously known as:
RGD ID: 2217698
Expected Size: 0 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,232,949 - 140,233,427UniSTSGRCh37
Build 365140,213,133 - 140,213,611RGDNCBI36
Celera5136,309,754 - 136,310,232RGD
HuRef5135,377,685 - 135,378,163UniSTS
Is Marker For: Genes:   PCDHA4   PCDHA3   PCDHA2   PCDHA8   PCDHA6   PCDHA9   PCDHA1   PCDHA5   PCDHA@   PCDHA7  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGAGATGGTAAAATTCAAAAC
Reverse Primer GATCTAAAATTTCGGTTGTAT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_014005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NW_922784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB002343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BV209423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 56117 UniSTS
  56140 UniSTS
  56141 UniSTS
  56142 UniSTS
  56143 UniSTS
  56144 UniSTS
  56145 UniSTS
  56146 UniSTS
  56147 UniSTS
  9752 UniSTS
UniSTS PCDHA9_3148 UniSTS SSLP Pipeline