SHGC-30883 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-30883

Symbol: SHGC-30883
Previously known as: SGC30883; WI-30883; EST319439; 
RGD ID: 2183345
Expected Size: 150 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376112,179,878 - 112,180,027UniSTSGRCh37
Build 366112,286,571 - 112,286,720RGDNCBI36
Celera6112,926,460 - 112,926,609RGD
Cytogenetic Map6q21UniSTS
HuRef6109,752,211 - 109,752,360UniSTS
Stanford-G3 RH Map64686.0UniSTS
GeneMap99-GB4 RH Map6473.22UniSTS
Whitehead-RH Map6690.0UniSTS
NCBI RH Map61429.4UniSTS
GeneMap99-G3 RH Map64989.0UniSTS
Is Marker For: Genes:   FYN  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCTGGGACCTCTGAGACCTT
Reverse Primer CCCCTTGAAGTGATGGAATC
 

Region

Nucleotide Sequences
GenBank Nucleotide AL158035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001614.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G23202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295063.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976333.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R85649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 2534 UniSTS
UniSTS SHGC-30883 UniSTS SSLP Pipeline