SHGC-64012 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-64012

Symbol: SHGC-64012
Previously known as:
RGD ID: 2181634
Expected Size: 191 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371852,893,704 - 52,893,894UniSTSGRCh37
Build 361851,044,702 - 51,044,892RGDNCBI36
Celera1849,611,074 - 49,611,264RGD
Cytogenetic Map18q21.1UniSTS
HuRef1849,603,367 - 49,603,557UniSTS
TNG Radiation Hybrid Map1821342.0UniSTS
Is Marker For: Genes:   TCF4  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCGCTGTGCCATAGCTTGAT
Reverse Primer ACTGCCTCCTCCTTCGTCTG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001083962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001626.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G38636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL296707.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976400.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 6925 UniSTS
UniSTS SHGC-64012 UniSTS SSLP Pipeline