WI-16830 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: WI-16830

Symbol: WI-16830
Previously known as: EST163454; 
RGD ID: 2167299
Expected Size: 150 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,345,788 - 40,345,937UniSTSGRCh37
Build 36240,199,292 - 40,199,441RGDNCBI36
Celera240,186,722 - 40,186,871RGD
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map2p23-p22UniSTS
HuRef240,085,218 - 40,085,367UniSTS
GeneMap99-GB4 RH Map2129.16UniSTS
Whitehead-RH Map2193.7UniSTS
Is Marker For: Genes:   SLC8A1   SLC8A1-AS1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTGGAACATGGAAAGTAAAGGA
Reverse Primer CCCACCTAACGTGGCCAT
 

Region

Nucleotide Sequences
GenBank Nucleotide AC007254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001610.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G24697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL301808.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976310.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  T93333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100128590 UniSTS
  6546 UniSTS
UniSTS WI-16830 UniSTS SSLP Pipeline