SHGC-32480 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-32480

Symbol: SHGC-32480
Previously known as: SGC32480; EST285459; 
RGD ID: 2163536
Expected Size: 103 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373119,136,445 - 119,136,547UniSTSGRCh37
Build 363120,619,135 - 120,619,237RGDNCBI36
Celera3117,544,912 - 117,545,014RGD
Cytogenetic Map3q13.33UniSTS
HuRef3116,511,841 - 116,511,943UniSTS
Stanford-G3 RH Map35360.0UniSTS
GeneMap99-GB4 RH Map3418.72UniSTS
Whitehead-RH Map3534.4UniSTS
NCBI RH Map31031.9UniSTS
GeneMap99-G3 RH Map35830.0UniSTS
Is Marker For: Genes:   ARHGAP31  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGTTTATTGCTTCTGCTTGTATACA
Reverse Primer GAGGAACCCCTCTCCCTTC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_020754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB033030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001611.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G25030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G27553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295650.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H24948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976318.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 57514 UniSTS
UniSTS SHGC-32480 UniSTS SSLP Pipeline