SHGC-2539 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-2539

Symbol: SHGC-2539
Previously known as: GDB:214353; GDB:223791; 
RGD ID: 2149281
Expected Size: 158 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371276,440,382 - 76,440,538UniSTSGRCh37
GRCh371232,876,818 - 32,876,974UniSTSGRCh37
Build 361232,768,085 - 32,768,241RGDNCBI36
Celera1212,697,516 - 12,697,672RGD
Celera1276,107,546 - 76,107,702UniSTS
Cytogenetic Map12q21.2UniSTS
Cytogenetic Map12p11.21UniSTS
HuRef1273,490,423 - 73,490,579UniSTS
HuRef1232,629,235 - 32,629,391UniSTS
GeneMap99-G3 RH Map121454.0UniSTS
Is Marker For: Genes:   DNM1L   NAP1L1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GATTATTGGATTGTCATTAGAGGAAG
Reverse Primer AGAGGAATGGATAGCACTACAAAC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_004537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_139207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC011611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF300335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001620.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G26670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976379.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976380.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 10059 UniSTS
  4673 UniSTS
UniSTS SHGC-2539 UniSTS SSLP Pipeline