SHGC-2340 Marker Search Result - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Marker: SHGC-2340

Symbol: SHGC-2340
Previously known as:
RGD ID: 2147993
Expected Size: 196 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375138,205,105 - 138,205,300UniSTSGRCh37
Build 365138,233,004 - 138,233,199RGDNCBI36
Celera5134,326,886 - 134,327,081RGD
Cytogenetic Map5q31.2UniSTS
HuRef5133,394,894 - 133,395,089UniSTS
GeneMap99-G3 RH Map55131.0UniSTS
Is Marker For: Genes:   LRRTM2   CTNNA1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GATATGAAAAGTATGCCCCC
Reverse Primer TTAAGGCACACTTCCTACACA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_015564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB007876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC011405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC034243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY884207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001613.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G05741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL304030.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976329.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 1495 UniSTS
  26045 UniSTS
UniSTS SHGC-2340 UniSTS SSLP Pipeline