STS-H71515 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: STS-H71515

Symbol: STS-H71515
Previously known as:
RGD ID: 2147639
Expected Size: 162 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376116,565,192 - 116,565,353UniSTSGRCh37
Build 366116,671,885 - 116,672,046RGDNCBI36
Celera6117,308,229 - 117,308,390RGD
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map6q24UniSTS
HuRef6142,592,616 - 142,592,790UniSTS
HuRef6114,145,385 - 114,145,546UniSTS
GeneMap99-GB4 RH Map6490.41UniSTS
NCBI RH Map61451.6UniSTS
Is Marker For: Genes:   UTRN   NT5DC1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGTTGTTAAACATCAAGATGATT
Reverse Primer TCTTTACTGAAAAATGAAGTGAA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_152729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK090918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001614.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976333.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 221294 UniSTS
  7402 UniSTS
UniSTS STS-H71515 UniSTS SSLP Pipeline