SGC30394 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SGC30394

Symbol: SGC30394
Previously known as: WI-30394; EST231129; 
RGD ID: 2123504
Expected Size: 128 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,905,850 - 5,905,977UniSTSGRCh37
Build 36205,853,850 - 5,853,977RGDNCBI36
Celera205,977,460 - 5,977,587RGD
Cytogenetic Map20pter-p12UniSTS
HuRef205,862,399 - 5,862,526UniSTS
GeneMap99-GB4 RH Map2043.14UniSTS
Whitehead-RH Map2034.8UniSTS
Is Marker For: Genes:   CHGB  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCAACTGAGACAAACATTTTTCC
Reverse Primer TGTCAGAATGCTATTGAAAATGTG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK293536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001628.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G06126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G21074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G60229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL294670.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976405.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R44737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 1114 UniSTS
UniSTS SGC30394 UniSTS SSLP Pipeline