SHGC-1891 Marker Search Result - Rat Genome Database

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Marker: SHGC-1891

Symbol: SHGC-1891
Previously known as: AFM240vh4; 
RGD ID: 2120055
Expected Size: 132 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37799,268,691 - 99,268,824UniSTSGRCh37
Build 36799,106,627 - 99,106,760RGDNCBI36
Celera794,002,926 - 94,003,059RGD
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map7q21.3-q22.1UniSTS
HuRef793,905,061 - 93,905,194UniSTS
CRA_TCAGchr7v2798,628,495 - 98,628,628UniSTS
GeneMap99-G3 RH Map74864.0UniSTS
Is Marker For: Genes:   CYP3A   CYP3A5  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGTGGAAGAAGAAGTGTCG
Reverse Primer TTGCTTATCTGTGGTGGTAGA
 

Region

Nucleotide Sequences
GenBank Nucleotide AC005020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236956.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001615.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ680079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G18301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976337.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 1574 UniSTS
  1577 UniSTS
UniSTS SHGC-1891 UniSTS SSLP Pipeline