SHGC-67594 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-67594

Symbol: SHGC-67594
Previously known as: stSG13150; 
RGD ID: 2117794
Expected Size: 118 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37457,327,294 - 57,327,411UniSTSGRCh37
Build 36457,022,051 - 57,022,168RGDNCBI36
Celera454,833,668 - 54,833,785RGD
Cytogenetic Map4q12UniSTS
HuRef453,281,435 - 53,281,552UniSTS
GeneMap99-GB4 RH Map4351.25UniSTS
Is Marker For: Genes:   PAICS  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGAGCATAACACAGTGTGAGGG
Reverse Primer CCATGAAACCTTCTGTAACCACAG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001079524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001079525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BV179638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G16695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G33728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL294551.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976325.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 10606 UniSTS
UniSTS SHGC-67594 UniSTS SSLP Pipeline