D5S522E Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: D5S522E

Symbol: D5S522E
Previously known as: GDB:193134; 
RGD ID: 2110937
Expected Size: 90 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37571,494,962 - 71,495,051UniSTSGRCh37
Build 36571,530,718 - 71,530,807RGDNCBI36
Celera567,390,374 - 67,390,463RGD
Cytogenetic Map5q13UniSTS
HuRef566,700,561 - 66,700,650UniSTS
Is Marker For: Genes:   MAP1B  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATGAGTACCCACCCTCTTCA
Reverse Primer GGAAAACTACCAAGACCCCT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_005909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC012609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN001084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN001085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001613.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ049386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL296622.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976328.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 4131 UniSTS
UniSTS D5S522E UniSTS SSLP Pipeline