SHGC-59680 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-59680

Symbol: SHGC-59680
Previously known as: A006U13; 
RGD ID: 1854504
Expected Size: 185 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374186,071,291 - 186,071,476UniSTSGRCh37
Build 364186,308,285 - 186,308,470RGDNCBI36
Celera4183,398,207 - 183,398,392RGD
Cytogenetic Map4q35UniSTS
HuRef4181,825,300 - 181,825,485UniSTS
GeneMap99-GB4 RH Map4683.16UniSTS
Is Marker For: Genes:   SLC25A4  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATTCATTGCATTATACGACT
Reverse Primer GAGAAGGTGTTTAGCAAGT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC112237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL299203.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976326.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 291 UniSTS
UniSTS SHGC-59680 UniSTS SSLP Pipeline