SHGC-31701 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-31701

Symbol: SHGC-31701
Previously known as: SGC31701; EST27240; 
RGD ID: 1847957
Expected Size: 150 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,793,346 - 6,793,495UniSTSGRCh37
GRCh3776,010,559 - 6,010,708UniSTSGRCh37
Build 3675,977,085 - 5,977,234RGDNCBI36
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map7p22.2UniSTS
HuRef76,664,396 - 6,664,545UniSTS
CRA_TCAGchr7v276,840,384 - 6,840,533UniSTS
CRA_TCAGchr7v276,056,904 - 6,057,053UniSTS
TNG Radiation Hybrid Map72866.0UniSTS
GeneMap99-GB4 RH Map737.25UniSTS
Whitehead-RH Map734.8UniSTS
NCBI RH Map7147.2UniSTS
GeneMap99-G3 RH Map7251.0UniSTS
Is Marker For: Genes:   PMS2   RSPH10B   RSPH10B2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGTGGTTCGAAGCAACACAA
Reverse Primer TCTCTGGTGCCAAAAAGGTT
 

Region

Nucleotide Sequences
GenBank Nucleotide AC005995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC073343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BV175031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BV178295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001615.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G25888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G26991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583343.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976334.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  T08186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 222967 UniSTS
  5395 UniSTS
  728194 UniSTS
UniSTS SHGC-31701 UniSTS SSLP Pipeline