NEF3_219 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: NEF3_219

Symbol: NEF3_219
Previously known as:
RGD ID: 1796398
Expected Size: 0 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371056,360,295 - 56,360,933UniSTSGRCh37
GRCh37824,775,971 - 24,776,603UniSTSGRCh37
Build 36824,831,876 - 24,832,508RGDNCBI36
Celera1049,623,439 - 49,624,077UniSTS
Celera823,739,382 - 23,740,014RGD
HuRef1050,344,320 - 50,344,958UniSTS
HuRef823,320,675 - 23,321,307UniSTS
Is Marker For: Genes:   NEFM   PCDH15  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTGCTACCAAATACATCACTA
Reverse Primer GTTTCCAATATGACCTTTATT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001105541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NW_923907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NW_924796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC021000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF106564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL391356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BV166533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF560737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100420737 UniSTS
  4741 UniSTS
  65217 UniSTS
UniSTS NEF3_219 UniSTS SSLP Pipeline