SHGC-64837 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-64837

Symbol: SHGC-64837
Previously known as:
RGD ID: 1787400
Expected Size: 119 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X100,882,653 - 100,882,771UniSTSGRCh37
Build 36X100,769,309 - 100,769,427RGDNCBI36
CeleraX101,403,231 - 101,403,349RGD
Cytogenetic MapXq22.1UniSTS
HuRefX90,690,459 - 90,690,577UniSTS
TNG Radiation Hybrid MapX21843.0UniSTS
Is Marker For: Genes:   ARMCX3  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGAATGCCCAGCAAAACAA
Reverse Primer GCAAAGTACTTACAATGTTCTGGCA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_016607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC196508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC234775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC238674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC240399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001631.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL299742.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH806593.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976428.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z73639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 51566 UniSTS
UniSTS SHGC-64837 UniSTS SSLP Pipeline