SHGC-33709 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-33709

Symbol: SHGC-33709
Previously known as: stSG20027; STEST161829; SGC33709; EST161829; 
RGD ID: 1774988
Expected Size: 127 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3766,655,051 - 6,655,177UniSTSGRCh37
Build 3666,600,050 - 6,600,176RGDNCBI36
Celera67,884,830 - 7,884,956RGD
Cytogenetic Map6p25.1UniSTS
HuRef66,531,416 - 6,531,542UniSTS
Stanford-G3 RH Map6172.0UniSTS
GeneMap99-GB4 RH Map642.81UniSTS
Whitehead-RH Map653.7UniSTS
NCBI RH Map679.9UniSTS
GeneMap99-G3 RH Map6172.0UniSTS
Is Marker For: Genes:   LY86  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGCACTCCTAAAAAGTTGAAAAGC
Reverse Primer GTCCCCGAATGTATCTGTTTC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_004271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB020499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF057178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL031123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001614.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G26160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G28149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL297367.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976331.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  T91708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 9450 UniSTS
UniSTS SHGC-33709 UniSTS SSLP Pipeline