D2S1939E Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: D2S1939E

Symbol: D2S1939E
Previously known as: GDB:581143; 
RGD ID: 1739281
Expected Size: 86 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372178,481,177 - 178,481,263UniSTSGRCh37
Build 362178,189,423 - 178,189,509RGDNCBI36
Celera2172,084,037 - 172,084,123RGD
Cytogenetic Map2q31.2UniSTS
HuRef2170,352,236 - 170,352,322UniSTS
Is Marker For: Genes:   IFT70A  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACTCTAGCAATTGTTGCTTG
Reverse Primer ACTATGCAGTGTAAGCTGCA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_152275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001610.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295416.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976313.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 92104 UniSTS
UniSTS D2S1939E UniSTS SSLP Pipeline