G54061 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: G54061

Symbol: G54061
Previously known as: 1813; 
RGD ID: 1712304
Expected Size: 166 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37729,960,442 - 29,960,607UniSTSGRCh37
Build 36729,926,967 - 29,927,132RGDNCBI36
Celera729,949,830 - 29,949,995RGD
Cytogenetic Map7p14.3-p14.1UniSTS
HuRef729,842,126 - 29,842,291UniSTS
CRA_TCAGchr7v2730,010,265 - 30,010,430UniSTS
Is Marker For: Genes:   SCRN1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAAGGAACCCCACAGCTAAG
Reverse Primer CCTTTCATTCTTGGAGGTGC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001145513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB071705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BL000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001615.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D83777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G54061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL296989.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976334.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 9805 UniSTS
UniSTS G54061 UniSTS SSLP Pipeline