SHGC-58846 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-58846

Symbol: SHGC-58846
Previously known as:
RGD ID: 1693772
Expected Size: 99 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3747,762,979 - 7,763,077UniSTSGRCh37
Build 3647,813,879 - 7,813,977RGDNCBI36
Celera47,664,845 - 7,664,943RGD
Cytogenetic Map4p16UniSTS
Cytogenetic Map4p16.1UniSTS
HuRef47,685,127 - 7,685,225UniSTS
TNG Radiation Hybrid Map44634.0UniSTS
Is Marker For: Genes:   AFAP1   AFAP1-AS1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAAGGAACCCACTGTCAGGC
Reverse Primer AAGCCTTTTAAAGCGGAGGC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001134647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC004169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF188700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D25248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G42567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL296182.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976321.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 60312 UniSTS
  84740 UniSTS
UniSTS SHGC-58846 UniSTS SSLP Pipeline