RH92627 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: RH92627

Symbol: RH92627
Previously known as: stSG47433; 
RGD ID: 1684204
Expected Size: 157 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37352,580,031 - 52,580,183UniSTSGRCh37
Build 36352,555,071 - 52,555,223RGDNCBI36
Celera352,559,402 - 52,559,554RGD
Cytogenetic Map3p21UniSTS
HuRef352,642,646 - 52,642,798UniSTS
GeneMap99-GB4 RH Map3164.33UniSTS
Is Marker For: Genes:   PBRM1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCACTGCTTTAGGGAAGCC
Reverse Primer TGGATGAGACTTCTTTGGGG
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_018313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC112215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001611.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL297121.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976316.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 55193 UniSTS
UniSTS RH92627 UniSTS SSLP Pipeline