SHGC-52097 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-52097

Symbol: SHGC-52097
Previously known as:
RGD ID: 1674019
Expected Size: 249 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372136,422,133 - 36,422,389UniSTSGRCh37
Build 362135,344,003 - 35,344,259RGDNCBI36
Celera2121,621,648 - 21,621,908RGD
Cytogenetic Map21q22.3UniSTS
HuRef2121,901,028 - 21,901,288UniSTS
TNG Radiation Hybrid Map2112571.0UniSTS
Is Marker For: Genes:   RUNX1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTTTAAAGCCTGGGAAAGGG
Reverse Primer AGTAACCACTGCTTTGTCCCA
 

Region

Nucleotide Sequences
GenBank Nucleotide AF015262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ229043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001629.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G34696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL294060.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976414.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U39636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z51993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 861 UniSTS
UniSTS SHGC-52097 UniSTS SSLP Pipeline