G30945 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: G30945

Symbol: G30945
Previously known as: SHGC-18825; 
RGD ID: 1663337
Expected Size: 137 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371563,362,644 - 63,362,780UniSTSGRCh37
Build 361561,149,697 - 61,149,833RGDNCBI36
Celera1540,242,350 - 40,242,486RGD
Cytogenetic Map15q22.1UniSTS
HuRef1540,185,615 - 40,185,751UniSTS
Is Marker For: Genes:   TPM1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGTTTCATGCACACTTCATTAGG
Reverse Primer CAGAAGCCCCTGGTTGTCT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001018008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001623.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G30945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL303073.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL582990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976389.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 7168 UniSTS
UniSTS G30945 UniSTS SSLP Pipeline