HSC1GA012 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: HSC1GA012

Symbol: HSC1GA012
Previously known as: WI-12930; 
RGD ID: 1662273
Expected Size: 207 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372101,631,622 - 101,631,828UniSTSGRCh37
Build 362100,998,054 - 100,998,260RGDNCBI36
Celera295,835,527 - 95,835,733RGD
Cytogenetic Map2q11.2UniSTS
HuRef295,395,663 - 95,395,869UniSTS
Whitehead-RH Map2483.7UniSTS
Is Marker For: Genes:   RPL31   TBC1D8  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGTGCAGTAATGTCCTAGGCC
Reverse Primer CTGTAGGCAGCTGGAACACA
 

Region

Nucleotide Sequences
GenBank Nucleotide AC016738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001610.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  F02923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G23998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL301236.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976313.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100420429 UniSTS
  11138 UniSTS
  6160 UniSTS
UniSTS HSC1GA012 UniSTS SSLP Pipeline