SHGC-76423 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-76423

Symbol: SHGC-76423
Previously known as: W46369; 
RGD ID: 1644717
Expected Size: 241 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371224,363,046 - 224,363,285UniSTSGRCh37
Build 361222,429,669 - 222,429,908RGDNCBI36
Celera1197,553,979 - 197,554,218RGD
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map1q42.11UniSTS
HuRef1194,883,773 - 194,884,012UniSTS
TNG Radiation Hybrid Map1111643.0UniSTS
GeneMap99-GB4 RH Map1715.51UniSTS
Is Marker For: Genes:   ZNF706  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAAATGAGTGTTTCTGTAGCCC
Reverse Primer ACTGTCTGTAGGACACAAATGC
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001042510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001267708.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001267709.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC092809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF275802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001609.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976305.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W46369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 51123 UniSTS
  724084 UniSTS
UniSTS SHGC-76423 UniSTS SSLP Pipeline