D2S405 Marker Search Result - Rat Genome Database

Symbol:

D2S405

Previously known as:

GATA8F07; SHGC-17686; CHLC.GATA8F07; CHLC.GATA8F07.P6464; CHLC.GATA8F07.440; GDB:686904; CHLC.440; GATA-D2S405; SHGC-4052;

RGD ID:

1298117

Expected Size:

248 (bp)

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	2	29,476,647 - 29,476,894	UniSTS	GRCh37
Build 36	2	29,330,151 - 29,330,398	RGD	NCBI36
Celera	2	29,321,095 - 29,321,342	RGD
Cytogenetic Map	2	p23	UniSTS
HuRef	2	29,217,701 - 29,217,948	UniSTS
Marshfield Genetic Map	2	47.97	RGD
Marshfield Genetic Map	2	47.97	UniSTS
TNG Radiation Hybrid Map	2	21358.0	UniSTS
TNG Radiation Hybrid Map	2	21364.0	UniSTS
deCODE Assembly Map	2	51.48	UniSTS
Stanford-G3 RH Map	2	1265.0	UniSTS
Whitehead-RH Map	2	163.3	UniSTS
Whitehead-YAC Contig Map	2		UniSTS
NCBI RH Map	2	194.4	UniSTS

Is Marker For:

QTLs: OSTEAR2_H
Genes: CACNA1F ALK

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Comprehensive human genetic maps: individual and sex-specific variation in recombination.	Broman KW, etal., Am J Hum Genet 1998 Sep;63(3):861-9.
2.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence

Region

Nucleotide Sequences


GenBank Nucleotide	AC074096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH003449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH003497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM001610.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DS486096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DS990734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	G08192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL582986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH976310.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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