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Human Genome Information - Human Genome Assembly GRCh38


Human genome projects have generated an unprecedented amount of knowledge about human genetics and health.Study of the human condition is supported by a wealth of genome-scale data that will result in significant medical advances derived from a better understanding human biology.

Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates[28]; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens.


Summary

AssemblyHuman Genome Assembly GRCh38
GCF_000001405.37
Total Sequence Length (bp)3,099,706,404
Total Ungapped Length (bp)2,948,583,725
Gaps Between Scaffolds (bp)349
Number of Scaffolds472
Scaffold N50 (bp)67,794,873
Scaffold L5016
Number of Contigs998
Contig N50 (bp)57,879,411
Contig L5018
No. of NCBI chromosome records24

Gene Counts

Total Genes58668
Protein Coding genes19531
Non coding RNA16970
tRNA462
SnRNA63
rRNA31
Pseudogenes16301
miRNA Targets Confirmed1739
miRNA Targets Predicted37825
Gene transcripts185226
Genes without orthologs37682
Genes with Orthologs20986

#Human Genes with Orthologs in...

Mouse19512
Rat18045
Chinchilla16210
Bonobo18100
Dog17812
Squirrel16455
Pig17604

Other

Exons530629
SSLPs30
Karyotype
 
Chromosomes
,
ChromosomeSequence LengthGap LengthGap CountContig CountRefSeq Id
1 248956422 18475301 77 12 NC_000001.11
2 242193529 1645288 22 7 NC_000002.12
3 198295559 195415 21 6 NC_000003.12
4 190214555 461888 18 9 NC_000004.12
5 181538259 272881 38 17 NC_000005.10
6 170805979 727455 16 3 NC_000006.12
7 159345973 375838 17 6 NC_000007.14
8 145138636 370500 14 6 NC_000008.11
9 138394717 16604164 44 21 NC_000009.12
10 133797422 534416 37 6 NC_000010.11
11 135086622 552880 19 6 NC_000011.10
12 133275309 137488 25 9 NC_000012.12
13 114364328 16381200 22 18 NC_000013.11
14 107043718 16475569 27 17 NC_000014.9
15 101991189 17349861 18 7 NC_000015.10
16 90338345 8532401 23 9 NC_000016.10
17 83257441 337225 37 10 NC_000017.11
18 80373285 283635 37 12 NC_000018.10
19 58617616 176858 10 7 NC_000019.10
20 64444167 499899 82 18 NC_000020.11
21 46709983 6621360 49 40 NC_000021.9
22 50818468 11658686 45 36 NC_000022.11
X 156040895 1147861 29 9 NC_000023.11
Y 57227415 30812367 56 13 NC_000024.10
MT 16569 - - 1 NC_012920.1
References