Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Dog Genome Information - Dog CanFam3.1 Assembly

The dog is a useful model organism for medical research due to extensive genetic diversity and morphological variation within the species. Many breeds of dog are particularly susceptible to inherited diseases that are also common in humans, such as cancer, heart disease, rheumatoid arthritis, autoimmune disorders, deafness, and blindness.

Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris.

Summary

AssemblyDog CanFam3.1 Assembly
GCF_000002285.3
Total Sequence Length (bp)2410960148
Total Ungapped Length (bp)2392698509
Gaps Between Scaffolds (bp)80
Number of Scaffolds3309
Scaffold N50 (bp)45876610
Scaffold L5020
Number of Contigs27105
Contig N50 (bp)267478
Contig L502436
No. of NCBI chromosome records39

Gene Counts

Total Genes32723
Protein Coding genes19641
Non coding RNA8860
tRNA375
SnRNA1
rRNA2
Pseudogenes3827
Gene transcripts86038
Genes without orthologs15060
Genes with Orthologs17663

#Dog Genes with Orthologs in...

Human17662
Mouse16974
Rat16887
Chinchilla15733
Bonobo16836
Squirrel16072
Pig16833
Naked Mole-rat
Green Monkey

Other

Exons358685
Karyotype
 
Chromosomes
,
ChromosomeSequence LengthGap LengthGap CountContig CountRefSeq Id
1 122678785 608162 1122 2 NC_006583.3
2 85426708 440374 828 4 NC_006584.3
3 91889043 341635 707 3 NC_006585.3
4 88276631 222025 622 2 NC_006586.3
5 88915250 358578 892 4 NC_006587.3
6 77573801 507123 786 5 NC_006588.3
7 80974532 366500 607 4 NC_006589.3
8 74330416 258844 583 2 NC_006590.3
9 61074082 385439 764 5 NC_006591.3
10 69331447 370774 744 2 NC_006592.3
11 74389097 229753 533 2 NC_006593.3
12 72498081 174211 482 1 NC_006594.3
13 63241923 266368 488 2 NC_006595.3
14 60966679 251289 345 1 NC_006596.3
15 64190966 335471 637 1 NC_006597.3
16 59632846 424930 442 3 NC_006598.3
17 64289059 198710 513 2 NC_006599.3
18 55844845 313802 589 2 NC_006600.3
19 53741614 134446 304 2 NC_006601.3
20 58134056 294362 687 2 NC_006602.3
21 50858623 235461 374 1 NC_006603.3
22 61439934 156328 371 2 NC_006604.3
23 52294480 125032 308 1 NC_006605.3
24 47698779 202506 455 1 NC_006606.3
25 51628933 276508 384 4 NC_006607.3
26 38964690 159756 391 2 NC_006608.3
27 45876710 150669 393 1 NC_006609.3
28 41182112 196202 395 3 NC_006610.3
29 41845238 135761 264 1 NC_006611.3
30 40214260 171680 372 1 NC_006612.3
31 39895921 132866 288 2 NC_006613.3
32 38810281 55209 190 1 NC_006614.3
33 31377067 138534 264 2 NC_006615.3
34 42124431 201803 297 2 NC_006616.3
35 26524999 108352 211 1 NC_006617.3
36 30810995 126343 254 1 NC_006618.3
37 30902991 161338 327 1 NC_006619.3
38 23914537 135461 308 1 NC_006620.3
X 123869142 687408 1032 2 NC_006621.3
MT 16727 - - 1 NC_002008.4
References
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ 3rd, Zody MC et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 2005 Dec 8;438(7069):803-19. PMID: 16341006