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Bonobo Genome Information - Bonobo PanPan1.1 Assembly


Although the bonobo, or pygmy chimpanzee, Pan paniscus and common chimpanzee Pan troglodytes are morphologically similar, studies have found that more than three per cent of the human genome is more closely related to either the bonobo or the chimpanzee genome than these are to each other.

Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan; Pan paniscus.


Summary
AssemblyBonobo PanPan1.1 Assembly
GCF_000258655.2
Base Pairs2,725,937,399
Total Sequence Length (bp)3,286,643,896
Total Assembly Gap Length (bp)560,706,734
Gaps Between Scaffolds (bp)734
Number of Scaffolds10,984
Scaffold N50 (bp)8,197,324
Scaffold L5094
Number of Contigs121,356
Contig N50 (bp)66,676
Contig L5011,048
No. of NCBI chromosome records25
Gene Counts
Total Genes32663
Protein Coding genes19971
Non coding RNA3722
tRNA338
SnRNA1402
rRNA4
Pseudogenes6116
Gene transcripts62481
Genes with Orthologs17504
#Bonobo Genes with Orthologs in...
Human17497
Mouse16624
Rat16526
Chinchilla15744
Dog16399
Squirrel16421
Other
Exons267182
Karyotype
 
Chromosomes
,
ChromosomeSequence LengthGap LengthGap CountContig CountRefSeq Id
1 229774977 18099337 9221 57 NC_027868.1
3 205426864 11171103 6047 29 NC_027871.1
4 195804263 11624697 5416 33 NC_027872.1
5 183735486 13071799 5127 41 NC_027873.1
6 173848474 11913837 5135 38 NC_027874.1
7 162613886 17428937 6419 54 NC_027875.1
8 144709823 11470230 4271 20 NC_027876.1
9 138149186 32949180 4213 30 NC_027877.1
10 134942546 12900928 4679 24 NC_027878.1
11 134183262 9935096 4873 30 NC_027879.1
12 135337776 8211754 6309 36 NC_027880.1
13 114479721 24772702 2352 15 NC_027881.1
14 107357366 22780577 3336 15 NC_027882.1
15 99763055 25046090 3241 29 NC_027883.1
16 90481686 21421327 4517 36 NC_027884.1
17 83442489 13048002 5634 40 NC_027885.1
18 77229886 5219506 1943 9 NC_027886.1
19 64411610 14133003 7005 35 NC_027887.1
20 62195757 4894721 2698 16 NC_027888.1
21 46275980 14523282 998 4 NC_027889.1
22 50109623 19525362 2550 22 NC_027890.1
X 155392059 11458743 5000 66 NC_027891.1
2A 114371477 11317447 3643 30 NC_027869.1
2B 247869975 122540459 3487 25 NC_027870.1
MT 16563 - - 1 NC_001644.1
References
The bonobo sequence is made freely available by the Max-Planck Institute for Evolutionary Anthropology. The initial analysis of this dataset can be found in Prufer K et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 2012 Jun 28;486(7404):527-31. PMID: 22722832 

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.