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Rat Rnor_6.0/Chromosome Y


Chromosome AssemblyRnor_6.0
RefSeq IdNC_024475.1
Chromosome Sequence Length3310458 bp
Gap Length121100
Gap Count13
Contig Count1
External Links

Gene Density Chromosome Y
Gene Counts (Chromosome Y)
Total Genes55
Protein Coding genes19
Non coding RNA19
Pseudogenes17
miRNA Targets Predicted1
Genes without orthologs46
Genes with Orthologs9
Rat Genes with Orthologs in .. (Chromosome Y)
Human8
Mouse5
Bonobo2
Dog2
Pig5
Other
Exons408
Gene transcripts66
Variants (Chromosome Y)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 10945 11111 862 8973 0 1 10259 10386 8382 9270 0 6818 7104 6957 0 1568 10647 9180 6459 8997 271 0 9439 11100 12021 651 7390 561 7639 8716 1159 8854 4 11228 11259 8808 11278 8536 11005 7 8718 303 276 6808 7050 9123 1158 9107 7276 6321 1044 9232 856 9026 1051 8438 6868 0 8928 4 9 9291 0 9301 9169 9845 1029 6354 933 284 9548 9450 669 482 15253 1022 638 10150 9625 652 9 447 268 7116 0 9389 393 246 6754 0
Ins 749 - - 584 - - 711 674 545 593 - 401 404 429 - - 728 565 331 577 - - 548 724 - - - - 503 544 - 528 - 782 730 589 736 535 757 - 501 - - 407 415 570 43 582 439 363 - 638 - 638 - 576 384 - 534 - - 605 - 581 562 - - - - - 596 588 - 5 - - - 686 - - - 8 - 409 - 595 - - 373 -
Del 797 - - 639 - - 774 724 580 635 - 444 464 421 - - 779 625 411 642 - - 622 771 - - - - 526 597 - 596 - 826 791 642 814 573 770 - 598 - - 438 472 622 55 612 491 389 - 675 - 623 - 582 414 - 567 - - 644 - 650 642 - - - - - 668 623 - 11 - - - 750 - - - 14 - 463 - 675 - - 429 -
Disease Gene Sets (Chromosome Y)
References