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Rat Rnor_6.0/Chromosome X


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005120.4
Chromosome Sequence Length159970021 bp
Gap Length13490321
Gap Count6016
Contig Count31
External Links

Gene Density Chromosome X
Gene Counts (Chromosome X)
Total Genes1729
Protein Coding genes942
Non coding RNA207
tRNA9
Pseudogenes573
miRNA Targets Confirmed2
miRNA Targets Predicted754
Genes without orthologs1075
Genes with Orthologs654
Rat Genes with Orthologs in .. (Chromosome X)
Human645
Mouse630
Chinchilla537
Bonobo577
Dog585
Squirrel558
Pig592
Other
Exons11551
QTLS24
SSLPs1426
Strains38
ClinVar Variants5
Gene transcripts2569
Variants (Chromosome X)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 164217 146659 69392 144821 64139 67093 68583 65806 50442 58863 7129 114944 73829 92554 54104 144326 159337 156038 133768 155988 68083 71832 154564 150890 122146 62556 105605 56254 127226 144465 148361 144510 47630 141131 176954 118365 135197 141784 161859 70708 122309 47165 44755 137547 120143 162530 162473 160799 140047 127650 60566 133318 61340 127507 63538 128472 156866 88131 183923 51624 69242 140539 69677 174101 178807 143440 72092 121955 68334 82152 176013 172079 77659 138467 142210 65020 61312 145966 120585 58498 53916 121819 89030 163606 80159 186645 87474 59784 139407 65760
Ins 38577 - - 33449 - - 29990 29454 24242 26347 - 30604 27290 28902 - - 37760 38062 31843 37841 - - 37816 37283 - - - - 29829 33592 - 36926 - 36286 39669 30054 35890 31715 38978 - 34649 - - 32322 31586 39303 38845 38595 32779 30336 - 33283 - 31091 - 31096 33363 - 40836 - - 34166 - 39646 40391 - - - - - 39742 39259 - 36399 - - - 36050 - - - 34597 - 35803 - 41617 - - 33091 -
Del 52449 - - 44822 - - 43493 42851 35188 38429 - 41848 38759 40360 - - 51145 52307 42959 51885 - - 51888 51091 - - - - 40099 45163 - 50979 - 50039 53609 40784 49640 42141 52823 - 48497 - - 43469 42750 53522 53230 52553 44025 40900 - 45590 - 42556 - 42409 44251 - 54868 - - 46657 - 53614 54382 - - - - - 53453 52934 - 49891 - - - 49502 - - - 47411 - 47559 - 55698 - - 44853 -
Disease Gene Sets (Chromosome X)
References