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Back to Rnor_6.0

Rat Rnor_6.0/Chromosome MT

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_001665.2
Chromosome Sequence Length	16313 bp
Gap Length	0
Gap Count	0
Contig Count	1

External Links

Gene Density Chromosome MT

Gene Counts (Chromosome MT)

Total Genes	35
Protein Coding genes	13
tRNA	22
miRNA Targets Predicted	13
Genes without orthologs	22
Genes with Orthologs	13

Rat Genes with Orthologs in .. (Chromosome MT)

Human	13
Mouse	13
Dog	13
Pig	13

Other

Variants (Chromosome MT)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	88	83	3	88	0	0	0	0	0	1	0	86	1	2	0	82	89	86	86	86	42	0	86	87	83	2	84	3	86	86	76	88	7	87	86	86	86	86	88	0	84	0	7	88	88	89	88	88	89	89	1	89	2	88	2	87	86	0	86	4	6	86	0	84	86	81	5	77	7	9	86	86	0	87	83	0	83	87	81	4	7	85	0	86	0	86	9	29	87	0
Ins	1	-	-	1	-	-	-	-	1	-	-	1	-	-	-	-	1	2	1	1	-	-	2	2	-	-	-	-	2	2	-	-	-	-	-	-	-	-	1	-	-	-	-	1	1	1	1	1	2	1	-	1	-	2	-	1	1	-	1	-	-	1	-	-	1	-	-	-	-	-	-	-	-	1	-	-	-	1	-	-	-	1	-	-	-	-	-	-	1	-
Del	3	-	-	3	-	-	-	-	-	-	-	3	-	-	-	-	3	3	3	3	-	-	3	3	-	-	-	-	3	3	-	2	-	2	2	2	2	2	3	-	2	-	-	3	3	3	3	3	3	3	-	3	-	3	-	3	3	-	3	-	-	3	-	3	3	-	-	-	-	-	2	2	-	3	-	-	-	3	-	-	-	3	-	2	-	2	-	-	3	-

Disease Gene Sets (Chromosome MT)

Disease	Genes
Animal Diseases	5
Chemically-Induced Disorders	2
Developmental Disease	13
disease by infectious agent	2
disease of anatomical entity	14
disease of cellular proliferation	11
Diseases of the Aged	5
Nutritional and Metabolic Diseases	13
Pathological Conditions, Signs and Symptoms	13
physical disorder	4
sensory system disease	12
syndrome	13
Wounds and Injuries	4

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

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