Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Rat Rnor_6.0/Chromosome 9


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005108.4
Chromosome Sequence Length122095297 bp
Gap Length5306378
Gap Count2976
Contig Count19
External Links

Gene Density Chromosome 9
Gene Counts (Chromosome 9)
Total Genes1476
Protein Coding genes870
Non coding RNA327
tRNA3
Pseudogenes279
miRNA Targets Confirmed2
miRNA Targets Predicted741
Genes without orthologs769
Genes with Orthologs707
Rat Genes with Orthologs in .. (Chromosome 9)
Human702
Mouse700
Chinchilla643
Bonobo667
Dog674
Squirrel654
Pig668
Other
Exons14646
QTLS67
SSLPs1873
Strains80
ClinVar Variants1
Gene transcripts3119
Variants (Chromosome 9)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 234693 212683 126073 224445 129712 110895 60182 60522 53653 57239 5269 195167 147323 169600 117212 241612 200300 192700 181863 192019 100480 104818 191835 233651 210042 134707 188340 121283 178340 194025 185067 234404 120709 221370 226650 110034 121153 91220 226338 130373 181839 91954 88087 199316 202332 213301 213191 223446 190954 204934 106272 191897 120605 205862 122390 206359 206251 126087 218178 113845 106946 206159 120307 214103 215348 204452 128592 176691 112242 147846 252315 242424 138186 203933 197081 117716 98504 200330 177500 106352 105863 191974 146988 238892 146623 251043 141645 135890 205812 116747
Ins 37384 - - 35244 - - 23078 23249 21488 22218 - 33587 29365 31132 - - 34591 34099 31728 33924 - - 33899 37589 - - - - 31051 33028 - 37587 - 37123 37517 25812 28800 23681 36992 - 32999 - - 33494 33827 35815 35767 36530 32886 33607 - 33287 - 34162 - 33944 33400 - 36123 - - 34303 - 35615 35922 - - - - - 39574 38605 - 33889 - - - 34364 - - - 32532 - 37358 - 39554 - - 34214 -
Del 48132 - - 44750 - - 32557 32635 30085 31288 - 42518 38647 40508 - - 44947 44270 40924 44099 - - 44099 47756 - - - - 39956 42168 - 48310 - 47158 47712 34804 38275 32405 47397 - 43078 - - 42632 43130 46233 46082 46421 42113 42591 - 43018 - 43223 - 43240 42783 - 46847 - - 44166 - 45886 46351 - - - - - 49817 48786 - 43735 - - - 44513 - - - 41777 - 47100 - 49904 - - 43996 -
Disease Gene Sets (Chromosome 9)
References