Genome Information - Rat Genome Database

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Back to Rnor_6.0

Rat Rnor_6.0/Chromosome 8

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_005107.4
Chromosome Sequence Length	133307652 bp
Gap Length	4774000
Gap Count	3152
Contig Count	26

External Links

Gene Density Chromosome 8

Gene Counts (Chromosome 8)

Total Genes	2142
Protein Coding genes	1298
Non coding RNA	489
tRNA	8
Pseudogenes	348
miRNA Targets Confirmed	5
miRNA Targets Predicted	1138
Genes without orthologs	1117
Genes with Orthologs	1025

Rat Genes with Orthologs in .. (Chromosome 8)

Human	1015
Mouse	1015
Chinchilla	912
Bonobo	962
Dog	983
Squirrel	925
Pig	959

Other

Exons	19254
QTLS	112
SSLPs	2531
Strains	88
ClinVar Variants	5
Gene transcripts	4135

Variants (Chromosome 8)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	199973	187040	128446	192593	132401	116449	63051	42747	37786	39812	5313	213701	83615	70326	149926	209066	205839	218026	208286	218161	142814	150197	217785	196054	178585	127852	167429	121592	210146	222745	199782	239319	148716	185496	165395	85045	212055	108913	229144	154402	192166	124473	119970	222390	213367	228439	222044	223035	208057	215720	148056	216026	137930	199685	149101	211895	202761	147149	213889	146861	137712	208854	125636	207798	230480	216939	157175	202078	150499	173505	257575	254764	171034	202843	200514	140109	128219	194084	177567	127068	128043	187322	172279	235601	167349	246312	162918	157445	186293	122833
Ins	38084	-	-	35652	-	-	25826	24046	22034	22807	-	37113	25915	25328	-	-	38512	39547	36738	39382	-	-	39443	37508	-	-	-	-	36446	38841	-	41639	-	37214	35516	26162	39529	28125	40608	-	37421	-	-	38210	37554	40517	39796	39666	37189	37182	-	38767	-	36410	-	37408	35806	-	39032	-	-	38043	-	38907	40610	-	-	-	-	-	43485	42995	-	36892	-	-	-	37313	-	-	-	35267	-	39836	-	42463	-	-	35740	-
Del	48089	-	-	44647	-	-	35029	33182	30089	31299	-	46237	34484	34093	-	-	48750	49446	45775	49284	-	-	49414	47188	-	-	-	-	45244	48197	-	51878	-	47241	45498	34671	49437	36529	50794	-	47375	-	-	47257	46723	50476	49752	49594	46398	46179	-	48513	-	45599	-	46757	44799	-	49021	-	-	47510	-	49068	50499	-	-	-	-	-	53681	53382	-	46282	-	-	-	47378	-	-	-	44319	-	49144	-	53018	-	-	44695	-

Disease Gene Sets (Chromosome 8)

Disease	Genes
Animal Diseases	83
Chemically-Induced Disorders	75
Developmental Disease	779
disease by infectious agent	106
disease of anatomical entity	863
disease of cellular proliferation	466
Diseases of the Aged	69
Nutritional and Metabolic Diseases	532
Occupational Diseases	4
Pathological Conditions, Signs and Symptoms	687
physical disorder	357
sensory system disease	302
Stomatognathic Diseases	53
syndrome	642
Wounds and Injuries	55

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message