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Rat Rnor_6.0/Chromosome 5

Chromosome AssemblyRnor_6.0
RefSeq IdNC_005104.4
Chromosome Sequence Length173707219 bp
Gap Length7642474
Gap Count4244
Contig Count26
External Links
Gene Density Chromosome 5
Gene Counts (Chromosome 5)
Total Genes1850
Protein Coding genes1308
Non coding RNA225
tRNA5
Pseudogenes315
miRNA Targets Confirmed6
miRNA Targets Predicted1192
Genes without orthologs678
Genes with Orthologs1172
Rat Genes with Orthologs in .. (Chromosome 5)
Human1159
Mouse1160
Chinchilla1073
Bonobo1118
Dog1122
Squirrel1081
Pig1113
Naked Mole-rat
Green Monkey
Other
Exons20514
QTLS132
SSLPs2975
Strains153
ClinVar Variants11
Gene transcripts4331
Variants (Chromosome 5)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
European Variation Archive Release 4
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 354771 327212 227520 340219 229095 229415 53456 52605 46349 49004 6733 329014 280785 183205 228885 341647 346946 334033 353911 337769 353710 233620 237971 351710 361917 325779 239002 318195 235484 323155 323765 320333 369490 228779 170670 183633 102585 277291 180537 329340 216502 340223 226571 218906 322179 323898 343227 344838 339077 321089 329663 234383 338477 233552 335354 231112 328953 335888 242788 353610 230351 223091 339621 214052 358523 348162 326472 232983 298401 221257 242592 362578 364004 241004 338836 329239 234165 224775 342086 308111 226488 229704 328892 248002 358563 249182 371276 243487 236729 351390 231861
Ins 59550 - - 55982 - - 34901 34622 31931 32899 - 55219 51003 44599 - - 58765 - 59499 55132 59270 - - 59062 60001 - - - - 53174 54894 - 60920 - 44641 45413 36501 53615 41989 57198 - 58338 - - 54020 54782 58319 58600 57532 53995 54252 - 57056 - 55736 - 54891 55056 - 59392 - - 56583 - 59813 58799 - - - - - 60317 60424 - 56304 - - - 58211 - - - 54816 - 58446 - 61543 - - 57588 -
Del 75388 - - 70587 - - 49277 48663 44511 46263 - 69391 65274 58548 - - 74366 3 75305 69530 74964 - - 74879 75401 - - - - 67137 69064 - 76880 - 59573 60356 49604 69405 55190 73068 - 73874 - - 68421 69554 74230 74283 73508 68504 68795 - 71747 - 69894 - 69043 69035 - 75239 - - 71354 - 75505 74429 - - - - - 76373 76247 - 70975 - - - 73419 - - - 68986 - 72919 - 77745 - - 72509 -
Disease Gene Sets (Chromosome 5)
References