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Back to Rnor_6.0

Rat Rnor_6.0/Chromosome 4

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_005103.4
Chromosome Sequence Length	184226339 bp
Gap Length	7221840
Gap Count	3914
Contig Count	28

External Links

Gene Density Chromosome 4

Gene Counts (Chromosome 4)

Total Genes	2360
Protein Coding genes	1378
Non coding RNA	502
tRNA	37
Pseudogenes	435
miRNA Targets Confirmed	7
miRNA Targets Predicted	1180
Genes without orthologs	1290
Genes with Orthologs	1070

Rat Genes with Orthologs in .. (Chromosome 4)

Human	1054
Mouse	1061
Chinchilla	923
Bonobo	984
Dog	1001
Squirrel	952
Pig	984

Other

Exons	19588
QTLS	185
SSLPs	2920
Strains	164
ClinVar Variants	3
Gene transcripts	4266

Variants (Chromosome 4)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	312437	291012	201322	300535	209460	190563	49318	46838	40379	43244	6450	275917	280186	162880	195774	287048	290315	309048	294529	309216	205092	215996	307941	321802	286639	202465	259370	185977	279412	306783	299655	330553	208161	154426	219708	175695	189033	247644	308782	205923	284843	188455	181825	298636	306410	321858	321748	311619	281568	299003	206278	299956	207813	297022	204198	292022	270259	201162	285643	197367	197434	291300	203093	270824	308491	252128	179809	240120	177222	221634	329358	324016	215139	289209	284970	199089	200159	304981	277716	202763	193733	294847	227754	328814	237971	343972	227076	216872	283969	192463
Ins	52547	-	-	49683	-	-	30800	30407	28102	28887	-	47389	48403	39094	-	-	50611	52269	48808	52035	-	-	52052	52327	-	-	-	-	47040	50250	-	54125	-	39701	45394	39829	42424	44751	52111	-	50047	-	-	49127	50105	53256	52984	52015	47888	49106	-	50392	-	49189	-	48773	46483	-	50173	-	-	49730	-	48697	51618	-	-	-	-	-	54002	53407	-	48735	-	-	-	51578	-	-	-	48254	-	52252	-	55443	-	-	48507	-
Del	66366	-	-	62014	-	-	42976	42375	38693	40051	-	59590	60396	50751	-	-	63916	65943	60949	65540	-	-	65644	65615	-	-	-	-	58545	62594	-	67601	-	52221	58364	50887	55324	56441	65338	-	63294	-	-	61188	62368	66616	66229	65248	59759	61359	-	63127	-	61290	-	60862	57955	-	63542	-	-	62354	-	61589	65090	-	-	-	-	-	67529	66842	-	60957	-	-	-	64803	-	-	-	59762	-	64493	-	68864	-	-	60649	-

Disease Gene Sets (Chromosome 4)

Disease	Genes
Animal Diseases	84
Chemically-Induced Disorders	67
Developmental Disease	545
disease by infectious agent	131
disease of anatomical entity	833
disease of cellular proliferation	509
Diseases of the Aged	63
Nutritional and Metabolic Diseases	301
Occupational Diseases	6
Pathological Conditions, Signs and Symptoms	494
physical disorder	204
sensory system disease	335
Stomatognathic Diseases	66
syndrome	359
Wounds and Injuries	61

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

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