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Back to Rnor_6.0

Rat Rnor_6.0/Chromosome 20

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_005119.4
Chromosome Sequence Length	56205956 bp
Gap Length	2147703
Gap Count	1549
Contig Count	13

External Links

Gene Density Chromosome 20

Gene Counts (Chromosome 20)

Total Genes	1140
Protein Coding genes	659
Non coding RNA	213
tRNA	1
Pseudogenes	268
miRNA Targets Confirmed	1
miRNA Targets Predicted	582
Genes without orthologs	641
Genes with Orthologs	499

Rat Genes with Orthologs in .. (Chromosome 20)

Human	488
Mouse	490
Chinchilla	439
Bonobo	459
Dog	449
Squirrel	440
Pig	454

Other

Exons	9169
QTLS	46
SSLPs	1144
Strains	37
Gene transcripts	1894

Variants (Chromosome 20)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	145016	138487	88389	140076	92152	73667	20220	20186	17729	18648	2281	117199	61198	34775	73983	147961	127989	128123	122129	128588	76976	82256	127791	128532	118403	76476	114515	72328	131567	127755	98431	139018	77353	20717	72996	65296	114845	82491	135002	81286	114957	65819	62930	129007	122088	138000	127800	124680	117534	129936	73093	122511	74363	118288	73078	119275	120097	79261	126885	72788	75924	123946	73704	121949	117169	114851	70811	113710	74092	71315	122166	119038	68458	127024	125826	80182	74337	127237	117120	77453	66797	111602	73645	125929	81303	131410	77656	76699	115522	72175
Ins	24463	-	-	22935	-	-	13980	13969	12749	13158	-	20569	16043	14433	-	-	22673	22631	21100	22670	-	-	22556	22384	-	-	-	-	21562	21958	-	23746	-	13917	17731	16766	21479	18023	23388	-	21389	-	-	21868	21277	23512	22666	22222	20822	21718	-	21463	-	20719	-	20753	20586	-	22410	-	-	21704	-	21855	21929	-	-	-	-	-	22084	21799	-	21972	-	-	-	22571	-	-	-	20152	-	21680	-	23276	-	-	20842	-
Del	31543	-	-	29615	-	-	20249	20187	18467	18989	-	26983	22408	20183	-	-	29841	29652	27544	29761	-	-	29788	29378	-	-	-	-	27943	28391	-	30688	-	20208	24731	22431	28488	23614	30565	-	28488	-	-	28330	27936	30650	29792	29177	27231	28130	-	28315	-	27354	-	27308	26949	-	29573	-	-	28535	-	28977	28783	-	-	-	-	-	29258	28729	-	28595	-	-	-	29571	-	-	-	26341	-	27913	-	30180	-	-	27311	-

Disease Gene Sets (Chromosome 20)

Disease	Genes
Animal Diseases	49
Chemically-Induced Disorders	43
Developmental Disease	253
disease by infectious agent	72
disease of anatomical entity	371
disease of cellular proliferation	151
Diseases of the Aged	41
Nutritional and Metabolic Diseases	95
Occupational Diseases	11
Pathological Conditions, Signs and Symptoms	262
physical disorder	88
sensory system disease	189
Stomatognathic Diseases	43
syndrome	203
Wounds and Injuries	36

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

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