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Rat Rnor_6.0/Chromosome 2


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005101.4
Chromosome Sequence Length266435125 bp
Gap Length14197426
Gap Count7138
Contig Count46
External Links

Gene Density Chromosome 2
Gene Counts (Chromosome 2)
Total Genes2810
Protein Coding genes1440
Non coding RNA675
tRNA42
SnRNA1
Pseudogenes660
miRNA Targets Confirmed6
miRNA Targets Predicted1203
Genes without orthologs1651
Genes with Orthologs1159
Rat Genes with Orthologs in .. (Chromosome 2)
Human1148
Mouse1149
Chinchilla1056
Bonobo1111
Dog1092
Squirrel1057
Pig1088
Other
Exons22225
QTLS222
SSLPs3384
Strains134
ClinVar Variants5
Gene transcripts4706
Variants (Chromosome 2)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 635062 575628 355020 607531 365042 347448 140738 126701 111297 118265 11545 563195 432917 339021 364780 592252 599015 605500 574519 606780 359161 371444 604508 640465 571285 374297 528085 357476 547744 571368 543250 625490 341252 568126 207288 268301 435116 358943 587204 353399 584300 342500 330002 578871 574821 616745 610567 592349 551240 577829 363025 585601 341992 555171 350607 561554 574490 380522 610026 349414 364079 571557 343081 580755 593479 536822 345280 516682 345869 366743 604998 606468 364792 566599 553684 351278 352807 611636 544495 361724 361739 578199 363661 584503 371440 624560 361956 342035 577831 342959
Ins 84107 - - 79766 - - 46345 45018 41638 42905 - 77003 67965 60749 - - 81344 82632 77340 82199 - - 82100 84267 - - - - 74530 78177 - 83665 - 79739 52268 54083 68885 60781 81038 - 80790 - - 77706 78075 83302 82682 81194 76158 77176 - 79934 - 75974 - 75832 76752 - 82464 - - 78044 - 80560 81417 - - - - - 82963 82799 - 77614 - - - 82376 - - - 77419 - 79085 - 84167 - - 78336 -
Del 103265 - - 97585 - - 62752 61327 56232 58278 - 93881 84749 76400 - - 100266 101679 94572 101237 - - 101295 103443 - - - - 91093 95456 - 102828 - 98301 69184 69259 86404 76226 99926 - 99818 - - 94668 94830 101960 101838 99988 93349 94045 - 97836 - 93477 - 93423 93920 - 101704 - - 95979 - 99498 100286 - - - - - 101342 101340 - 95415 - - - 101294 - - - 94717 - 96028 - 103204 - - 95995 -
Disease Gene Sets (Chromosome 2)
References