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Rat Rnor_6.0/Chromosome 19


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005118.4
Chromosome Sequence Length62275575 bp
Gap Length2383999
Gap Count1763
Contig Count8
External Links

Gene Density Chromosome 19
Gene Counts (Chromosome 19)
Total Genes1022
Protein Coding genes581
Non coding RNA274
tRNA8
Pseudogenes160
miRNA Targets Confirmed2
miRNA Targets Predicted508
Genes without orthologs526
Genes with Orthologs496
Rat Genes with Orthologs in .. (Chromosome 19)
Human495
Mouse492
Chinchilla450
Bonobo468
Dog471
Squirrel462
Pig471
Other
Exons9235
QTLS36
SSLPs1161
Strains23
ClinVar Variants3
Gene transcripts1936
Variants (Chromosome 19)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 126177 111325 64034 118916 63065 46249 45922 45557 41873 43384 3053 116805 56724 43455 61599 115574 126131 121859 115079 122076 61434 62110 121719 130103 112787 66938 104329 63496 112617 115627 94721 143492 71985 95409 112014 100976 101708 99590 127233 66837 98611 46212 44014 118043 119852 130454 126040 126373 115236 118887 40761 90335 42333 90599 40644 88765 112924 60125 120035 53810 50499 111811 61923 111411 120382 105017 61704 97752 62456 81783 143109 126094 67041 91280 83490 42644 35220 103624 86603 45895 53952 108176 78813 129422 72475 138722 75809 73018 102520 51675
Ins 22326 - - 20893 - - 15097 14928 13774 14212 - 20770 15350 14101 - - 22316 21779 20214 21687 - - 21643 22745 - - - - 19563 20485 - 23949 - 19631 20813 19128 19826 18622 22282 - 19795 - - 20526 21184 22745 22184 22207 20505 20544 - 18421 - 18158 - 17664 19972 - 21597 - - 20460 - 21016 21722 - - - - - 23873 21966 - 18401 - - - 20006 - - - 19679 - 22047 - 23514 - - 19671 -
Del 29636 - - 27517 - - 21987 21752 19921 20530 - 27281 21768 20425 - - 29677 29148 27098 29177 - - 29075 30045 - - - - 26149 27515 - 31297 - 26508 28106 25670 27135 25160 29721 - 26923 - - 27181 28080 30174 29681 29674 27186 27344 - 25230 - 24591 - 24299 26679 - 29154 - - 27417 - 28083 28868 - - - - - 31348 29219 - 25065 - - - 27302 - - - 26308 - 28927 - 30837 - - 26442 -
Disease Gene Sets (Chromosome 19)
References