Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Rat Rnor_6.0/Chromosome 18

Chromosome AssemblyRnor_6.0
RefSeq IdNC_005117.4
Chromosome Sequence Length88201929 bp
Gap Length3659600
Gap Count1957
Contig Count7
External Links
Gene Density Chromosome 18
Gene Counts (Chromosome 18)
Total Genes1043
Protein Coding genes552
Non coding RNA276
tRNA1
Pseudogenes213
miRNA Targets Confirmed3
miRNA Targets Predicted462
Genes without orthologs590
Genes with Orthologs453
Rat Genes with Orthologs in .. (Chromosome 18)
Human449
Mouse445
Chinchilla379
Bonobo411
Dog414
Squirrel390
Pig405
Other
Exons8172
QTLS117
SSLPs1397
Strains59
ClinVar Variants1
Gene transcripts1737
Variants (Chromosome 18)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 150953 142073 100477 145040 101797 79150 21852 21732 18937 20219 3087 118626 102586 130546 84677 142579 134869 128472 122669 128469 86386 90199 128061 139443 127026 94794 126905 96613 126057 125472 134569 149025 96360 135192 37751 100336 97389 128485 134509 92365 91710 59071 56777 129265 130595 127234 127207 136937 131878 129013 101000 142855 92450 130225 92103 129423 129390 96901 135790 80412 84707 122283 86183 110515 151408 129288 93837 102136 76023 112258 159200 161920 113370 134451 133855 94724 90343 136297 125353 92260 65811 95411 110581 120744 84954 120198 79575 81289 115349 78090
Ins 27560 - - 25815 - - 16504 16482 15062 15484 - 23620 22498 24814 - - 26006 25551 23712 25376 - - 25487 26402 - - - - 23687 24388 - 27439 - 26232 17680 22145 22717 24302 26032 - 22235 - - 24275 24738 25526 25391 26308 24662 24122 - 26290 - 24623 - 24342 24187 - 26382 - - 24246 - 24124 27687 - - - - - 28288 28562 - 25297 - - - 26366 - - - 21245 - 23776 - 25070 - - 23636 -
Del 34362 - - 32244 - - 22420 22232 20567 21018 - 29478 28475 30905 - - 32593 32277 29856 31975 - - 32211 33133 - - - - 29534 30471 - 34164 - 32790 23764 28023 29148 30191 32670 - 28654 - - 30338 30714 32072 31969 32813 30637 30208 - 32441 - 30550 - 30381 30055 - 33021 - - 30480 - 30429 34458 - - - - - 35063 35403 - 31296 - - - 32731 - - - 27075 - 29855 - 31643 - - 29660 -
Disease Gene Sets (Chromosome 18)
References