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Back to Rnor_6.0

Rat Rnor_6.0/Chromosome 17

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_005116.4
Chromosome Sequence Length	90843779 bp
Gap Length	3861880
Gap Count	2235
Contig Count	10

External Links

Gene Density Chromosome 17

Gene Counts (Chromosome 17)

Total Genes	1319
Protein Coding genes	676
Non coding RNA	344
tRNA	93
Pseudogenes	207
miRNA Targets Confirmed	5
miRNA Targets Predicted	545
Genes without orthologs	827
Genes with Orthologs	492

Rat Genes with Orthologs in .. (Chromosome 17)

Human	485
Mouse	480
Chinchilla	409
Bonobo	450
Dog	447
Squirrel	418
Pig	448

Other

Exons	10100
QTLS	90
SSLPs	1445
Strains	46
Gene transcripts	2231

Variants (Chromosome 17)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	190711	177584	117246	183412	120720	118764	39504	39379	34602	37253	4473	171528	156649	90303	114867	185802	182152	192843	184652	192424	122499	127223	192415	182709	165793	111918	154642	107397	176762	177795	184557	196820	114950	69342	140265	155932	76322	109929	185405	116799	188413	119449	114465	176461	175145	196750	193097	187246	172653	177054	119150	182163	117882	178537	118038	176209	178789	121775	188624	116019	114269	181741	112470	189214	187759	164506	114957	150216	109052	126442	198940	198631	125520	177480	174175	117014	112430	186119	169086	116434	111196	175300	126002	188874	125583	201672	126152	119535	187456	120622
Ins	33065	-	-	31069	-	-	20318	20131	18472	19189	-	30191	28782	23673	-	-	32523	33442	30965	33279	-	-	33209	32348	-	-	-	-	30048	30762	-	33581	-	23045	28854	29317	23133	24586	32698	-	32762	-	-	30430	30576	33794	33245	32817	30289	30446	-	31731	-	30780	-	30617	30300	-	32839	-	-	31564	-	32836	32942	-	-	-	-	-	33973	33804	-	30951	-	-	-	32525	-	-	-	30396	-	32031	-	34236	-	-	31811	-
Del	41769	-	-	39057	-	-	28155	27909	25567	26394	-	37510	36762	31351	-	-	40890	42013	38816	41814	-	-	41830	40968	-	-	-	-	37752	38726	-	42592	-	31135	37435	36961	31170	31962	41131	-	41299	-	-	38228	38424	42259	41683	41440	37891	38102	-	39809	-	38688	-	38454	38308	-	41573	-	-	39625	-	41288	41430	-	-	-	-	-	42439	42298	-	39121	-	-	-	40960	-	-	-	37868	-	39858	-	43040	-	-	39813	-

Disease Gene Sets (Chromosome 17)

Disease	Genes
Animal Diseases	29
Chemically-Induced Disorders	33
Developmental Disease	244
disease by infectious agent	44
disease of anatomical entity	353
disease of cellular proliferation	180
Diseases of the Aged	26
Nutritional and Metabolic Diseases	93
Occupational Diseases	2
Pathological Conditions, Signs and Symptoms	276
physical disorder	71
sensory system disease	196
Stomatognathic Diseases	28
syndrome	208
Wounds and Injuries	24

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

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