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Rat Rnor_6.0/Chromosome 16


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005115.4
Chromosome Sequence Length90668790 bp
Gap Length4501710
Gap Count2398
Contig Count15
External Links

Gene Density Chromosome 16
Gene Counts (Chromosome 16)
Total Genes1128
Protein Coding genes645
Non coding RNA255
tRNA1
Pseudogenes226
miRNA Targets Predicted536
Genes without orthologs607
Genes with Orthologs521
Rat Genes with Orthologs in .. (Chromosome 16)
Human517
Mouse514
Chinchilla462
Bonobo489
Dog490
Squirrel465
Pig484
Other
Exons9872
QTLS57
SSLPs1492
Strains40
Gene transcripts2163
Variants (Chromosome 16)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 190147 175753 117107 183141 118641 113398 38313 38296 34066 35743 4111 167872 43610 91925 110293 168178 168874 169084 166435 173406 107653 111300 166736 147426 130923 84696 125756 84423 158646 134736 158116 144327 79596 139609 143160 125948 82703 107305 142086 84456 100084 52598 50179 141965 161495 148341 147858 167110 134530 156797 91903 144334 91521 145675 91154 144293 125406 81223 132576 64819 81859 139521 82242 129713 142192 151932 103568 149501 106516 100703 161636 154989 94873 138619 136251 89119 78269 135873 120763 79442 81632 131925 102638 187897 126110 196539 122500 118772 143976 85800
Ins 31604 - - 30000 - - 18843 18677 17409 17808 - 28629 18222 22352 - - 29534 29900 28496 30167 - - 29858 27437 - - - - 27578 26248 - 27757 - 27583 27403 25019 22415 23374 27599 - 23884 - - 26503 28122 28127 27957 29959 25754 27613 - 27161 - 26621 - 26421 24705 - 26629 - - 26650 - 26312 27529 - - - - - 29195 28614 - 26501 - - - 26667 - - - 25488 - 30755 - 32468 - - 26720 -
Del 39871 - - 37492 - - 26563 26224 24283 25131 - 35910 25335 29767 - - 37721 37975 35576 38170 - - 37931 35608 - - - - 34378 33743 - 35618 - 35390 35370 32269 30274 30383 35825 - 31909 - - 33923 35669 36282 36324 38052 33359 34712 - 34634 - 34104 - 33975 31760 - 34884 - - 34303 - 34416 35524 - - - - - 37244 36567 - 34000 - - - 34767 - - - 32579 - 38068 - 40660 - - 34233 -
Disease Gene Sets (Chromosome 16)
References