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Back to Rnor_6.0

Rat Rnor_6.0/Chromosome 15

Chromosome Assembly	Rnor_6.0
RefSeq Id	NC_005114.4
Chromosome Sequence Length	111246239 bp
Gap Length	5179110
Gap Count	2906
Contig Count	10

External Links

Gene Density Chromosome 15

Gene Counts (Chromosome 15)

Total Genes	1379
Protein Coding genes	683
Non coding RNA	350
tRNA	13
Pseudogenes	300
miRNA Targets Confirmed	3
miRNA Targets Predicted	574
Genes without orthologs	836
Genes with Orthologs	543

Rat Genes with Orthologs in .. (Chromosome 15)

Human	535
Mouse	534
Chinchilla	455
Bonobo	488
Dog	500
Squirrel	469
Pig	493

Other

Exons	10212
QTLS	62
SSLPs	1490
Strains	36
ClinVar Variants	1
Gene transcripts	2374

Variants (Chromosome 15)

	ACI/EurMcwi (2019)	ACI/EurMcwi (MCW)	ACI/EurMcwi (RGD)	ACI/N (2020)	ACI/N (MCW)	BBDP/Wor (RGD)	BN-Lx/CubMcwi (2019)	BN/NHsdMcwi (2019)	BN/NHsdMcwi (2020)	BN/SsN (2020)	BN/SsN (MCW)	BUF/N (2020)	BXH2/CubMcwi (2020)	BXH3/CubMcwi (2020)	Buf/N (MCW)	COP/CrCrl (MCW & UW)	DA/OlaHsd (2019)	F344/DuCrl (2019)	F344/N (2020)	F344/NCrl (2019)	F344/NCrl (RGD)	F344/NRrrc (MCW)	F344/Stm (2019)	FHH/EurMcwi (2019)	FHH/EurMcwi (MCW)	FHH/EurMcwi (RGD)	FHL/EurMcwi (MCW)	FHL/EurMcwi (RGD)	FXLE16/Stm (2020)	FXLE18/Stm (2020)	GH/OmrMcwi (MCW)	GK/FarMcwi (2019)	GK/Ox (RGD)	HXB10/IpcvMcwi (2019)	HXB2/IpcvMcwi (2019)	HXB20/IpcvMcwi (2020)	HXB31/IpcvMcwi (2019)	HXB4/IpcvMcwi (2020)	LE/Stm (2019)	LE/Stm (RGD)	LEW/Crl (2019)	LEW/Crl (RGD)	LEW/NCrlBR (RGD)	LEXF10A/StmMcwi (2020)	LEXF11/Stm (2020)	LEXF1A/Stm (2019)	LEXF1C/Stm (2019)	LEXF2B/Stm (2019)	LEXF3/Stm (2020)	LEXF4/Stm (2020)	LH/MavRrrc (RGD)	LH/MavRrrcAek (2020)	LL/MavRrrc (RGD)	LL/MavRrrcAek (2020)	LN/MavRrrc (RGD)	LN/MavRrrcAek (2020)	M520/N (2020)	M520/N (MCW)	M520/NRrrcMcwi (2019)	MHS/Gib (RGD)	MNS/Gib (RGD)	MR/N (2020)	MR/N (MCW)	MWF/Hsd (2019)	PVG/Seac (2019)	SBH/Ygl (MCW)	SBH/Ygl (RGD)	SBN/Ygl (MCW)	SBN/Ygl (RGD)	SHR/NHsd (RGD)	SHR/OlalpcvMcwi (2019)	SHRSP/A3NCrl (2019)	SHRSP/Gcrc (RGD)	SR/JrHsd (2020)	SR/JrHsd (MCW)	SR/JrHsd (RGD)	SS/Jr (RGD)	SS/JrHsdMcwi (2019)	SS/JrHsdMcwi (MCW)	SS/JrHsdMcwi (RGD)	WAG/Rij (RGD)	WAG/RijCrl (2020)	WKY/Gcrc (RGD)	WKY/N (2020)	WKY/N (MCW)	WKY/NCrl (2019)	WKY/NCrl (RGD)	WKY/NHsd (RGD)	WN/N (2020)	WN/N (MCW)
SNV	199982	175015	106745	188374	110088	107794	58901	57986	51162	53746	5262	163541	82954	63118	96102	171664	188755	178405	169823	182888	98227	101261	180881	168381	142268	83753	128175	81929	161949	160224	162815	214275	118555	133885	123443	98610	59641	176120	184144	100439	156389	79965	76940	179690	164204	185809	184456	181278	171592	164435	113562	193892	107302	184797	118411	195606	172979	108663	189507	89104	90782	168766	100061	168748	156826	150710	90381	147591	93754	123342	205009	219136	131035	178859	171539	104558	103191	189514	163153	105191	83223	149276	128721	189376	118748	202040	115031	110219	174379	95786
Ins	33452	-	-	31274	-	-	21635	21296	19727	20278	-	28807	22605	21336	-	-	32535	31773	29656	31702	-	-	31792	30276	-	-	-	-	28463	29030	-	34685	-	27594	26945	23732	21501	30188	31875	-	29586	-	-	30556	29355	32213	31865	31701	29691	28741	-	32420	-	31194	-	32098	29463	-	32138	-	-	30132	-	30996	29541	-	-	-	-	-	33975	35190	-	30823	-	-	-	32600	-	-	-	27902	-	31926	-	34136	-	-	30472	-
Del	41820	-	-	39066	-	-	29290	29026	26829	27273	-	36212	29753	28145	-	-	40801	39786	36946	40174	-	-	39817	38389	-	-	-	-	35737	36731	-	43049	-	35530	34540	30848	29319	37136	40073	-	37700	-	-	38097	36933	40528	40082	39927	37071	36211	-	40265	-	38512	-	39451	36642	-	40482	-	-	37933	-	39130	37609	-	-	-	-	-	41806	43468	-	38263	-	-	-	40608	-	-	-	35217	-	39263	-	42315	-	-	38176	-

Disease Gene Sets (Chromosome 15)

Disease	Genes
Animal Diseases	32
Chemically-Induced Disorders	40
Developmental Disease	246
disease by infectious agent	50
disease of anatomical entity	345
disease of cellular proliferation	183
Diseases of the Aged	24
Nutritional and Metabolic Diseases	98
Occupational Diseases	1
Pathological Conditions, Signs and Symptoms	242
physical disorder	82
sensory system disease	164
Stomatognathic Diseases	25
syndrome	196
Wounds and Injuries	25

References

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. PMID: 15057822
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. PMID: 15060021
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. PMID: 15059999
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. PMID: 11917038

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