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Rat Rnor_6.0/Chromosome 13


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005112.4
Chromosome Sequence Length114033958 bp
Gap Length5396487
Gap Count2678
Contig Count23
External Links

Gene Density Chromosome 13
Gene Counts (Chromosome 13)
Total Genes1269
Protein Coding genes685
Non coding RNA297
tRNA33
Pseudogenes254
miRNA Targets Confirmed4
miRNA Targets Predicted605
Genes without orthologs690
Genes with Orthologs579
Rat Genes with Orthologs in .. (Chromosome 13)
Human578
Mouse574
Chinchilla525
Bonobo554
Dog551
Squirrel537
Pig548
Other
Exons10901
QTLS71
SSLPs1644
Strains125
ClinVar Variants2
Gene transcripts2296
Variants (Chromosome 13)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 205061 194108 128049 197921 136462 138357 32998 28190 24795 26627 4739 189843 186644 76353 138623 238908 198496 197593 189207 197796 128016 137053 196415 189276 175250 127939 163686 119902 190416 202111 191022 190858 117058 194558 194865 177248 129268 184595 216731 144599 91210 51333 48904 194776 208773 197100 201907 195007 187775 207769 108140 159148 110525 160311 107503 155537 160484 120253 168453 105568 84094 161752 120511 163872 198234 183524 122873 185040 131527 128629 196566 195291 126271 159087 159252 108707 106609 165684 153727 108708 78270 118323 141507 210272 152721 216986 141848 136553 193026 128893
Ins 36388 - - 34434 - - 23511 22797 21017 21706 - 33530 33244 25628 - - 35321 35605 33060 35650 - - 35419 35754 - - - - 32860 34431 - 35554 - 35224 35326 32244 30402 32576 37202 - 28050 - - 33383 34852 35456 35969 35215 33163 34373 - 32304 - 31724 - 31302 31233 - 34076 - - 33098 - 32421 36154 - - - - - 35406 35246 - 31978 - - - 33769 - - - 28289 - 35525 - 37838 - - 33810 -
Del 45456 - - 42583 - - 31991 31155 28627 29949 - 41936 41226 33595 - - 44107 44497 41167 44512 - - 44262 44946 - - - - 40647 42616 - 44452 - 44124 44316 40215 39279 40437 46203 - 36879 - - 41371 43143 44506 44921 44109 41093 42400 - 40765 - 39585 - 39355 39579 - 43204 - - 41539 - 41155 44886 - - - - - 44339 44289 - 40432 - - - 42665 - - - 36287 - 43794 - 46906 - - 42116 -
Disease Gene Sets (Chromosome 13)
References