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Rat Rnor_6.0/Chromosome 12


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005111.4
Chromosome Sequence Length52716770 bp
Gap Length2892239
Gap Count1941
Contig Count13
External Links

Gene Density Chromosome 12
Gene Counts (Chromosome 12)
Total Genes1053
Protein Coding genes674
Non coding RNA226
tRNA6
rRNA1
Pseudogenes147
miRNA Targets Confirmed3
miRNA Targets Predicted568
Genes without orthologs503
Genes with Orthologs550
Rat Genes with Orthologs in .. (Chromosome 12)
Human547
Mouse543
Chinchilla504
Bonobo519
Dog514
Squirrel509
Pig523
Other
Exons10460
QTLS74
SSLPs1400
Strains43
ClinVar Variants3
Gene transcripts2031
Variants (Chromosome 12)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 125942 114044 63807 119037 66038 63717 37622 37917 33598 35225 2597 115173 109487 88624 62400 117507 104129 115907 108123 117183 57154 60834 115103 120855 106332 60881 103757 61747 100978 110434 112097 125615 59400 55526 104571 32984 48254 106458 109466 57631 119808 60339 57525 108442 103359 112767 109137 113945 106598 106657 61086 113705 59974 110991 55541 105860 106453 58804 114445 59247 59300 115559 66669 123227 124543 107711 62126 107662 67710 65346 124301 123546 64718 116742 115114 64106 62154 123091 109836 65186 57587 101601 62572 114607 61466 122446 58462 58632 114615 62215
Ins 24166 - - 22316 - - 15932 16037 14434 14954 - 21594 21485 19797 - - 22098 23356 21450 23373 - - 23053 23500 - - - - 20290 21956 - 24059 - 17730 22659 14822 17147 20996 22880 - 23607 - - 21418 21103 23018 22551 22946 21111 21101 - 22556 - 21702 - 21278 20939 - 23185 - - 23011 - 23898 23938 - - - - - 24143 23912 - 22364 - - - 23721 - - - 21105 - 21916 - 23930 - - 22450 -
Del 32348 - - 29718 - - 23214 23254 21063 22000 - 29246 29100 26648 - - 29840 31197 28550 31279 - - 30880 31474 - - - - 27552 29302 - 32154 - 25140 30509 21672 24499 28046 30670 - 31317 - - 28565 28451 30936 30504 30745 28213 28194 - 30064 - 29298 - 28623 28062 - 31072 - - 30429 - 31919 31783 - - - - - 32132 32044 - 29780 - - - 31743 - - - 28315 - 29347 - 31916 - - 30066 -
Disease Gene Sets (Chromosome 12)
References