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Rat Rnor_6.0/Chromosome 11


Chromosome AssemblyRnor_6.0
RefSeq IdNC_005110.4
Chromosome Sequence Length90463843 bp
Gap Length3246769
Gap Count1949
Contig Count9
External Links

Gene Density Chromosome 11
Gene Counts (Chromosome 11)
Total Genes1119
Protein Coding genes628
Non coding RNA265
tRNA3
Pseudogenes222
miRNA Targets Confirmed1
miRNA Targets Predicted528
Genes without orthologs628
Genes with Orthologs491
Rat Genes with Orthologs in .. (Chromosome 11)
Human484
Mouse483
Chinchilla416
Bonobo444
Dog457
Squirrel426
Pig451
Other
Exons8914
QTLS40
SSLPs1305
Strains31
ClinVar Variants1
Gene transcripts1975
Variants (Chromosome 11)
ACI/EurMcwi (2019)
ACI/EurMcwi (MCW)
ACI/EurMcwi (RGD)
ACI/N (2020)
ACI/N (MCW)
BBDP/Wor (RGD)
BN-Lx/CubMcwi (2019)
BN/NHsdMcwi (2019)
BN/NHsdMcwi (2020)
BN/SsN (2020)
BN/SsN (MCW)
BUF/N (2020)
BXH2/CubMcwi (2020)
BXH3/CubMcwi (2020)
Buf/N (MCW)
COP/CrCrl (MCW & UW)
DA/OlaHsd (2019)
F344/DuCrl (2019)
F344/N (2020)
F344/NCrl (2019)
F344/NCrl (RGD)
F344/NRrrc (MCW)
F344/Stm (2019)
FHH/EurMcwi (2019)
FHH/EurMcwi (MCW)
FHH/EurMcwi (RGD)
FHL/EurMcwi (MCW)
FHL/EurMcwi (RGD)
FXLE16/Stm (2020)
FXLE18/Stm (2020)
GH/OmrMcwi (MCW)
GK/FarMcwi (2019)
GK/Ox (RGD)
HXB10/IpcvMcwi (2019)
HXB2/IpcvMcwi (2019)
HXB20/IpcvMcwi (2020)
HXB31/IpcvMcwi (2019)
HXB4/IpcvMcwi (2020)
LE/Stm (2019)
LE/Stm (RGD)
LEW/Crl (2019)
LEW/Crl (RGD)
LEW/NCrlBR (RGD)
LEXF10A/StmMcwi (2020)
LEXF11/Stm (2020)
LEXF1A/Stm (2019)
LEXF1C/Stm (2019)
LEXF2B/Stm (2019)
LEXF3/Stm (2020)
LEXF4/Stm (2020)
LH/MavRrrc (RGD)
LH/MavRrrcAek (2020)
LL/MavRrrc (RGD)
LL/MavRrrcAek (2020)
LN/MavRrrc (RGD)
LN/MavRrrcAek (2020)
M520/N (2020)
M520/N (MCW)
M520/NRrrcMcwi (2019)
MHS/Gib (RGD)
MNS/Gib (RGD)
MR/N (2020)
MR/N (MCW)
MWF/Hsd (2019)
PVG/Seac (2019)
SBH/Ygl (MCW)
SBH/Ygl (RGD)
SBN/Ygl (MCW)
SBN/Ygl (RGD)
SHR/NHsd (RGD)
SHR/OlalpcvMcwi (2019)
SHRSP/A3NCrl (2019)
SHRSP/Gcrc (RGD)
SR/JrHsd (2020)
SR/JrHsd (MCW)
SR/JrHsd (RGD)
SS/Jr (RGD)
SS/JrHsdMcwi (2019)
SS/JrHsdMcwi (MCW)
SS/JrHsdMcwi (RGD)
WAG/Rij (RGD)
WAG/RijCrl (2020)
WKY/Gcrc (RGD)
WKY/N (2020)
WKY/N (MCW)
WKY/NCrl (2019)
WKY/NCrl (RGD)
WKY/NHsd (RGD)
WN/N (2020)
WN/N (MCW)
SNV 159856 146927 101841 153407 101547 80765 24092 24053 21322 22729 3262 119393 122793 121782 83013 147748 133360 157305 150729 157601 105872 109586 144862 122606 108653 78281 105049 77576 134986 130986 145024 154061 93188 94651 99415 45034 129331 39941 139900 92711 102481 64787 62255 133367 139069 137982 137401 143622 133098 139655 98090 142290 101966 145505 94975 135321 141637 105852 148686 91306 85779 134105 97485 159225 148185 115674 82871 121195 89783 106058 159173 152287 100207 147370 142815 101587 91271 140331 126508 92926 83153 121750 107125 139727 98129 144775 93796 91740 148741 99048
Ins 25672 - - 24196 - - 14504 14317 13407 13697 - 21452 21913 21934 - - 23246 25663 24123 25619 - - 24540 22489 - - - - 22117 22340 - 25503 - 20556 20734 15175 23120 14689 23844 - 20918 - - 22197 23139 23812 23761 24381 22342 22855 - 23995 - 23842 - 22707 23267 - 25072 - - 23119 - 25840 24790 - - - - - 25843 25252 - 24171 - - - 24064 - - - 21718 - 23307 - 24459 - - 24245 -
Del 31372 - - 29285 - - 19207 19020 17669 18074 - 26064 26534 26462 - - 28655 31219 29090 31119 - - 29978 27756 - - - - 26858 27431 - 30904 - 25742 25892 19544 28298 18855 29466 - 25948 - - 27139 28144 29200 29266 29883 27313 27666 - 29124 - 28742 - 27464 28021 - 30230 - - 27841 - 31227 30000 - - - - - 31209 30769 - 29173 - - - 29423 - - - 26486 - 28396 - 29957 - - 29365 -
Disease Gene Sets (Chromosome 11)
References